Creates a data file in HDF5 format from a Seurat object.
Usage
CreateDataFile(
srt,
DataFile,
name = NULL,
assays = "RNA",
slots = "data",
compression_level = 6,
overwrite = FALSE
)Arguments
- srt
The Seurat object.
- DataFile
Path to the output data file. If not provided, the file will be named "Data.hdf5" in the current directory.
- name
Name of the dataset. If not provided, the name will default to the Seurat object's project name.
- assays
Character vector specifying the assays to include in the data file. Default is "RNA".
- slots
Character vector specifying the slots to include in the data file. Default is "data".
- compression_level
Compression level for the HDF5 dataset. Default is 6.
- overwrite
Logical value indicating whether to overwrite existing data in the data file. Default is FALSE.