Check and install R packages

Usage

check_R(
  packages,
  install_methods = c("BiocManager::install", "install.packages",
    "devtools::install_github"),
  lib = .libPaths()[1],
  force = FALSE
)

Arguments

packages: Package to be installed. Package source can be CRAN, Bioconductor or Github, e.g. scmap, quadbiolab/simspec. By default, the package name is extracted according to the packages parameter.
install_methods: Functions used to install R packages.
lib: The location of the library directories where to install the packages.
force: Whether to force the installation of packages. Default is FALSE.